VACV-70c Control

No CDS activation with VACV-70c (Control)

Negative control for VACV-70 - CDS Ligand

VACV-70c (control) is a negative control for the CDS agonist VACV-70. VACV-70 is a 70 bp oligonucleotide containing viral DNA motifs [1]. VACV-70 derives from the vaccinia virus DNA. Transfected VACV-70 was shown to potently induce IFN-β in a TLR-, DAI- and RNA Pol III-independent, but STING-, TBK1- and IRF3-dependent manner. Transfected VACV-70 potently induces an immune response following recognition by the cytosolic DNA sensors (CDSs), DEAD-box protein 41 (DDX41) [2] or interferon γ-inducible protein 16 (IFI16) [1]. IFI16 induces innate immune responses against single-stranded (ss)and double-stranded (ds) intracellular DNA while DDX41 detects not only viral dsDNA but also bacterial cyclic dinucleotides. DDX41 and IFI16 activation trigger type I interferon (IFN) induction via the STING/TBK1 pathway.

Mode of action:

Intracellular DNA from pathogens is recognized by multiple CDSs, which display contextual preferences for the recognition of DNA [1].
Transfected VACV-70 has been shown to potently induce IFN-β in a Toll-like receptor (TLR)-, DNA-dependent activator of IRFs (DAI)-, and RNA polymerase III (Pol III)-independent, but STING-, TBK1- and IFN regulatory factor 3 (IRF3)-dependent manner [1,2]. Studies have demonstrated that transfected VACV-70 is recognized by DDX41 [2] and IFI16 [1].

VACV-70c (control) is a single-stranded oligonucleotide which, unlike its double-stranded counterpart, VACV-70, is not an IFN-inducer. VACV-70c is available complexed with the cationic lipid transfection reagent LyoVec™ to facilitate its uptake.

Key features of VACV-70c:

• Negative control for VACV-70
• Available naked or complexed with the cationic lipid LyoVec™
• Each lot is functionally validated

Read our review on cytosolic DNA sensors

Reference:

1. Unterholzner L. et al., 2010. IFI16 is an innate immune sensor for intracellular DNA. Nat Immunol. 11(11):997-1004.
2. Sharma S. & Fitzgerald KA. 2011. Innate immune sensing of DNA. PLoS Pathog. 7(4):e1001310.

Specifications

Activity: Control for VACV-70 (CDS ligand)

Formulation: Naked or complexed with the transfection reagent LyoVec™

Sequence: 

5’ CCATCAGAAAGAGGTTTAATATTTTTGTGAGACCATCGAAGAGAGAAAGAGATAAAACTTTTTTACGACT 3’
 

Quality control: 

• The inability to induce type I interferon (IFN) has been verified using cellular assays.
• The absence of bacterial contamination, such as lipoproteins and endotoxins, has been confirmed using HEK-Blue™ TLR2 and HEK-Blue™ TLR4 cells.

Contents

VACV-70c Naked:

• 200 µg lyophilized VACV-70c Naked
• 1.5 ml endotoxin-free water

VACV-70c/LyoVec™:

• 100 µg lyophilized VACV-70c/LyoVec™
• 10 ml endotoxin-free water

Product is shipped at room temperature

 Upon receipt, store at -20°C.

Details

IFI16

IFN γ-inducible protein 16 (IFI16) and its murine orthologue p204 induce innate immune responses against single-stranded (ss) and double-stranded (ds) cytosolic DNA [1,2]. Located predominantly in the nucleus and in small fractions in the cytoplasm, IFI16 can function to activate type I interferon (IFN) responses via STING-mediated phosphorylation of TBK1 and IFN regulatory factor 3 (IRF3) [3]. IFI16 has been reported to sense the DNA of several viruses such as herpesviruses (HSV), cytomegalovirus, and Epstein-Barr virus [1]. 

DDX41

DEAD-box protein 41 (DDX41) has been shown to induce IFN-β responses upon stimulation with poly(dA:dT), HSV-1, Listeria monocytogenes, and adenovirus [4,5].  This IFN-β induction by DDX41 has been shown to occur via the STING/TBK1/IRF3 signaling pathway. DDX41 was also found to bind to and control the IFN response to cyclic-dinucleotides (CDNs) such as cyclic-di-AMP and cyclic-di-GMP [6]. 

Reference:

1. Zahid A. et al, 2020. Molecular and Structural Basis of DNA Sensors in Antiviral Innate Immunity. Front Immunol. 2020 Nov 30;11:613039.
2. Unterholzner L. et al., 2010. IFI16 is an innate immune sensor for intracellular DNA. Nat Immunol. 11(11):997-1004.
3. Stratmann S.A. et al., 2015. The innate immune sensor IFI16 recognizes foreign DNA in the nucleus by scanning along the duplex. Elife (2015) 4:e11721.
4. Zhang Z. et al., 2011. The helicase DDX41 senses intracellular DNA mediated by the adaptor STING in dendritic cells. Nat Immunol.12(10):959-65.
5. Stein S.C.& Falck-Pedersen E., 2012. Sensing adenovirus infection: activation of interferon regulatory factor 3 in RAW 264.7 cells. J Virol. 86:4527–4537.
6. Parvatiyar K. et al., 2012. The helicase DDX41 recognizes the bacterial secondary messengers cyclic di-GMP and cyclic di-AMP to activate a type I interferon immune response. Nat Immunol. 13:1155–1161.