Omicron Variant (JN.1) Spike Pseudotyping Vector

For lentiviral particle pseudotyping with the SARS-CoV-2 Spike (JN.1 - USA, Sept. 2023) 

pLV-SpikeV16 has been specifically designed for the pseudotyping of lentiviral particles with the SARS-CoV-2 Spike (S) protein when co-transfected with plasmids encoding a reporter and accessory proteins (not provided). pLV-SpikeV16 encodes the full-length Spike sequence from the Omicron variant (JN.1 lineage), and for optimal expression, it is codon-optimized and the C‑terminal ER-retention signal has been removed [1, 2].

 More details

Omicron Variant (JN.1 lineage) Spike pseudotyping vector

Gene Description

This plasmid encodes the Spike protein from the SARS-CoV-2 Omicron JN.1 variant, first reported in the USA in September 2023. This variant, also known as 'Juno', is classified as a member of Clade GRA/JN.1 lineage (Nextstrain/Pango lineage classification). It is characterized by the presence of several mutations within the Spike coding region, of which, several are of concern [3,4].

• S1 domain: ins16MPLF, T19I, R21T, deletion (Δ)L24-P26, A27S, S50L, ΔH69-70, V127F, G142D, ΔY144, F157S, R158G, ΔN211, L212I, V213G, L216F, H245N, A264D, E554K, A570V, D614G, P621S, H655Y, N679K, P681R
• RBD: I332V, G339H, K356T, S371F, S373P, S375F, T376A, R403K, D405N, R408S, K417N, N440K, K445H, G446S, N450D, L452W, L455S, N460K, S477N, T478K, N481K, ΔV483, E484K, F486P, Q498R, N501Y, Y505H
• S2 domain: N764K, D796Y, S939F, Q954H, N969K, P1143L

Learn more about SARS-CoV-2 variants

General Plasmid Description

This plasmid features a potent mammalian expression cassette composed of the ubiquitous human-(h)CMV composite promoter, a rabbit β-globin intron directly upstream of the spike gene, and a rabbit β-globin polyadenylation (pAn) signal. The spike coding sequence includes the SARS-CoV-2 signal sequence and the S1/S2 furin cleavage site [5]. These plasmids are selectable with ampicillin in E. coli.

Applications

• Generation of Spike pseudotyped lentiviral particles upon co-transfection
  with reporter and accessory protein plasmids (not provided).
• Screening of SARS-CoV-2 inhibitors including small molecules,
  monoclonal antibodies, or convalescent plasma.

References:

1. Johnson, M.C. et al. 2020. Optimized Pseudotyping Conditions for the SARS-COV-2 Spike Glycoprotein. J Virol 94.
2. Ou, X. et al. 2020. Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV. Nat Commun 11, 1620.
3. https://www.who.int/en/activities/tracking-SARS-CoV-2-variants/
4. https://outbreak.info/situation-reports
5. Coutard, B. et al. 2020. The spike glycoprotein of the new coronavirus 2019-nCoV contains a furin-like cleavage site absent in CoV of the same clade. Antiviral Res 176, 104742.

Specifications

• Origin: Omicron variant (JN.1 lineage)
• Sequence Reference: EPI_ISL_18300149
• Codon Optimized
• ORF size: 3756 bp
• Sequencing primers:
  - Forward rbt β-globin intron: TGGTTACAATGATATACACTG
  - Reverse rbt β-globin pAn: CTCAAGGGGCTTCATGATGTC
• Quality Control:
  - Plasmid construct is confirmed by restriction analysis and full‑length open reading frame (ORF) sequencing.
  - After purification by ion-exchange chromatography, predominant supercoiled conformation is verified by electrophoresis.

Contents

pLV-SpikeV16 is provided as follows:

• 20 μg of lyophilized DNA

 The product is shipped at room temperature.

 Lyophilized DNA should be stored at -20 °C.

 Resuspended DNA should be stored at -20 °C and is stable for up to 1 year.

Details

Spike-pseudotyping of lentiviral particles

InvivoGen's pLV-Spike plasmid collection has been designed for pseudotyping lentiviral particles with the SARS-CoV-2 Spike (S) protein. The S protein a structural glycoprotein expressed on the surface of SARS‑CoV-2. It mediates membrane fusion and viral entry into target cells upon binding to the host receptor ACE2 and its cleavage by cellular proteases such as TMPRSS2 [1]. Notably, the C‑terminal cytoplasmic tail of the S protein encodes a presumptive endoplasmic reticulum (ER)‑retention motif (KxHxx), which has previously been shown to enable the accumulation of SARS‑CoV S proteins at the ER‑Golgi intermediate compartment (ERGIC) and facilitate their incorporation into new virions [2]. The removal of this motif (d19) has been shown to increase the expression of the spike protein in pseudovirions [3,4].

Pseudotyped particle production involves the co-transfection of 293T cells with a reporter protein vector (e.g. GFP), one or several plasmids encoding the necessary lentiviral proteins, and the pseudotyping pLV-Spike plasmids. The transfected cells produce SARS‑CoV‑2 Spike (S)‑pseudotyped lentiviral particles, which can then be used to infect permissive cells, such as ACE2‑expressing HEK293-derived cells and ACE2‑TMPRSS2‑expressing A549-derived cells.

References

1. Hoffmann M. et al. 2020. SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor. Cell. 181:1-16.
2. Ujike, M. et al. 2016. The contribution of the cytoplasmic retrieval signal of severe acute respiratory syndrome coronavirus to intracellular accumulation of S proteins and incorporation of S protein into virus-like particles. J Gen Virol 97, 1853-1864.
3. Johnson, M.C. et al. 2020. Optimized pseudotyping conditions for the SARS-COV2 Spike glycoprotein. J Virol. 94(21):e01062-20
4. Ou, X. et al. 2020. Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV. Nat Commun 11, 1620.